Computational Biophysics Group

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Publications

International publications


    Submitted


  1. Nililla Nisoh, Mikko Karttunen, Luca Monticelli, and Jirasak Wong-ekkabut*, Lipid monolayer disruption caused by aggregated carbon nanoparticles


  2. 2013


  3. Viwan Jarerattanachat, Mikko Karttunen, and Jirasak Wong-ekkabut*, Molecular Dynamics Study of Oxidized Lipid Bilayers In NaCl Solution, The Journal of Physical Chemistry B, Vol. 117 (28), July 2013, pp 84908501, PDF, Link


  4. Mohsen Pourmousa, Jirasak Wong-ekkabut, Michale Patra, and Mikko Karttunen, Molecular dynamics studies of transportan interacting with a DPPC bilayer, The Journal of Physical Chemistry B, Vol. 117 (1), January 2013, pp 230241, PDF, Link


  5. 2012


  6. Jirasak Wong-ekkabut*, and Mikko Karttunen, Assessment of common simulation protocols for simulations of nanopores, membrane proteins & channels, Journal of Chemical Theory and Computation, Vol. 8 ,Issue 8, August 2012, pp. 29052911, PDF, Link

  7. Jirasak Wong-ekkabut, Viwan Jarerattanachat, Tunyarat Phasiri and Mikko Karttunen, The Effects of NaCl on Oxidized Lipid Bilayers, 56th annual Biophysical Meeting, San Diego convention center, San Diego, California, USA, 25-29 February 2012, Biophysical Journal, Vol. 102, No. 3, 2012, 648A-648A, Link.


  8. 2011


  9. Elio Cino, Jirasak Wong-ekkabut, Mikko Karttunen, and Wing-Yiu Choy, Microsecond Molecular Dynamics Simulations of Intrinsically Disordered Proteins Involved in the Oxidative Stress Response, PLoS ONE, Vol. 6, No. 11, November 2011, e27371, PDF, Link.


  10. 2010


  11. Jirasak Wong-ekkabut, Markus Miettinen, Cristiano L. Dias, Mikko Karttunen, Static charges cannot drive a continuous flow of water molecules through a carbon nanotube, Nature Nanotechnology, Vol. 5, August 2010, pp. 555 - 557, PDF, Link .

  12. Cristiano L. Dias, Tapio Ala-Nissila, Jirasak Wong-ekkabut, Ilpo Vattulainen, Martin Grant and Mikko Karttunen, Reply to the Comment by Graziano on The hydrophobic effect and its role in cold denaturation, Cryobiology, Vol. 60, No. 3, June 2010, pp. 356-357, PDF, Link

  13. Sudarat Chadsuthi, Jirasak Wong-ekkabut ,Wannapong Triampo, Galayanee Doungchawee, and Darapond Triampo, Comparison of the effects of UV-A radiation on Leptospira interrogan serovar Bataviae, Canicola, and Pomona, African Journal of Biotechnology, Vol. 9, No. 21, 24 May 2010, pp. 3196-3206, PDF, Link.

  14. Cristiano L. Dias, Tapio Ala-Nissila, Jirasak Wong-ekkabut, Ilpo Vattulainen, Martin Grant and Mikko Karttunen, The hydrophobic effect and its role in cold denaturation, Cryobiology, Vol. 60, No. 1, February 2010, pp. 91-99, PDF, Link .


  15. 2009


  16. Jirasak Wong-ekkabut, Sudarat Chadsuthi, Wannapong Triampo, Galayanee Doungchawee, Darapond Triampo, and Chartchai Krittanai, Leptospirosis research, Response of pathogenic spirochete to ultaviolet-A irradiation, African Journal of Biotechnology, Vol. 8, No. 14, 20 July 2009, pp. 3341-3352, PDF, Link.


  17. 2008


  18. Jirasak Wong-ekkabut, Svetlana Baoukina, Wannapong Triampo, I-Ming Tang, D. Peter Tieleman, and Luca Monticelli, Computer simulation study of fullerene translocation through lipid membranes, Nature Nanotechnology, Vol. 3, June 2008, pp. 363-368, PDF, Supplementary information, Link, More comments.
  19. Cover story on the June 2008 issue of Nature Nanotechnology









    Large image



    2007


  20. Jirasak Wong-ekkabut, Zhitao Xu, Wannapong Triampo, I-Ming Tang, D. Peter Tieleman, and Luca Monticelli, Effect of lipid peroxidation on the properties of lipid bilayers: a molecular dynamics study, Biophysical Journal, Vol. 93, No. 12, December 2007, pp. 4225-4236, PDF, Link.

  21. W. Triampo, D. Baowan, I.M. Tang , N. Nuttavut, J. Wong-ekkabut, and G. Doungchawee, A Simple Deterministic Model for the Spread of Leptospirosis in Thailand, International Journal of Biomedical Sciences, Vol. 2, No. 1, 2007, pp. 22-26, PDF, Link.

  22. Jirasak Wong-ekkabut, Luca Monticelli, Zhitao Xu, Svetlana Baoukina, Wannapong Triampo, I Ming Tang, and Peter Tieleman, Effect of peroxidation on the properties of a palmitoyl-2-linoleyl-sn-glycero-3-phosphatidylcholine bilayer,51st annual Biophysical Meeting, Baltimore convention center, Baltimore, Maryland, USA, 3-7 March 2007, 427A-427A, Link.

  23. Luca Monticelli, Jirasak Wong-ekkabut, Svetlana Baoukina, D. Peter Tieleman, Interactions between carbon nanoparticles and lipid bilayers: insights from MD simulations with a coarse-grained model, 51st annual Biophysical Meeting, Baltimore convention center, Baltimore, Maryland, USA, 3-7 March 2007, 539A- 539A, Link.


  24. 2006


  25. A. Boondirek, J. Poulter, W. Triampo, J. Wong-ekkabut, I. M. Tang, and P. Picha, A Stochastic Model of Cancer Growth with Immune Response, Journal of the Korean Physical Society, Vol. 49, No. 4, October 2006, pp. 1652-1666, PDF, Link, Link1.


  26. 2004


  27. J. Wong-ekkabut, W. Triampo, I-Ming Tang, D. Triampo D. Baowan, and Y. Lenbury, Vacancy-Mediated Disordering Process in Binary Alloys at Finite Temperatures: Monte Carlo Simulations, Journal of the Korean Physical Society, Vol. 45, No. 2, August 2004, pp. 310-317, PDF, Link, Link1.

  28. Wannapong Triampo, Galayanee Doungchawee, Darapond Triampo, Jirasak Wong-ekkabut, and I-Ming Tang, Effects of Static Magnetic Field on Growth of Leptospire, Leptospira interrogans serovar canicola: Immunoreactivity and Cell Division, Journal of Bioscience and Bioengineering, Vol. 98, No. 3, 2004, pp.182-186, PDF, Link.


  29. 2003


  30. Wannapong Triampo, I-Ming Tang, and Jirasak Wong-ekkabut, Explicit Calculations on Small Non-equilibrium Driven Latice Gas Models, Journal of the Korean Physical Society, Vol. 43, No. 2, August 2003, pp. 207-214, PDF, Link, Link1.

International seminars, conferences, and workshops

  1. Jirasak Wong-ekkabut, Viwan Jarerattanachat, Tunyarat Phasiri and Mikko Karttunen, The Effects of NaCl on Oxidized Lipid Bilayers, 56th annual Biophysical Meeting, San Diego convention center, San Diego, California, USA, 25-29 February 2012, Link.

  2. Amir Mohsen Pourmousa Abkenar, Jirasak Wong-ekkabut , Michael Patra, and Mikko Karttunen, Cell Penetration by Transportan, APS March Meeting 2010, Volume 55, Number 2, Portland, Oregon, USA, 1519 March 2010

  3. Jirasak Wong-ekkabut, Effects of lipid peroxidation on the properties of biological membrane, Department of Applied Physics, Helsinki University of Technology, Espoo, Finland, 26 October 2009

  4. Jirasak Wong-ekkabut, Permeation of water molecules through nanopore, Computational Soft Matter Research Group, Department of Applied Physics, Helsinki University of Technology, Espoo, Finland, 15 October 2009

  5. Jirasak Wong-ekkabut and Mikko Karttunen, Water permeation through alpha hemolysin nanopore, 1st Nano Today conference, Biopolis, Singapore, 2-5 August 2009

  6. Jirasak Wong-ekkabut and Mikko Karttunen, Water permeation through alpha hemolysin protein nanopore, SHARCNET Research Day 2009: HPC Innovation for Research, Arts Lecture Hall Complex, University of Waterloo, Waterloo, Ontario, Canada, 21 May 2009

  7. Jirasak Wong-ekkabut, Luca Monticelli, Zhitao Xu, Svetlana Baoukina, Wannapong Triampo, I Ming Tang, and Peter Tieleman, Effect of peroxidation on the properties of a palmitoyl-2-linoleyl-sn-glycero-3-phosphatidylcholine bilayer,51st annual Biophysical Meeting, Baltimore convention center, Baltimore, Maryland, USA, 3-7 March 2007, 427A-427A, Link.

  8. Luca Monticelli, Jirasak Wong-ekkabut, Svetlana Baoukina, D. Peter Tieleman, Interactions between carbon nanoparticles and lipid bilayers: insights from MD simulations with a coarse-grained model, 51st annual Biophysical Meeting, Baltimore convention center, Baltimore, Maryland, USA, 3-7 March 2007, 539A- 539A, Link.

  9. J. Wong-ekkabut , W. Triampo, S. Chadsuthi, G. Doungchawee, C. Krittanai, and I. M. Tang, Response of pathogenic Leptospira interrogans serovar Canicola to UVA Irradiation, International Leptospirosis Society 4th Scientific Meeting (ILS2005), Central Duangtawan Hotel, Chiang Mai, Thailand, 14-16 November 2005

  10. W. Triampo, D. Arayasantiparb and J. Wong-ekkabut, Monte Carlo Studies of Nonwquilibrium Vacancy Mediated Dynamics in Binary Alloys, Annual National Computational Science and Engineering Symposium 2002(ANSCSE6), Walailak University, Nakonsritammarat, Thailand, 3-5 April 2002

Domestical reviews, seminars, conferences, and workshops

  1. ѡ ǧ͡ص(Jirasak Wong-ekkabut), ͧ Դе٨, ÿԡ(Thai Journal of Physics), շ 28, Ѻ 4, ѹҤ 2554-Ҿѹ 2555, ˹ 11-17, PDF

  2. Jirasak Wong-ekkabut, The workshop on "Introduction to Molecular Medeling : Gromacs Package", Annual National Computational Science and Engineering Symposium 20012(ANSCSE16), Chiang Mai University, Chiang Mai, Thailand, 23 May 2012, Link

  3. Jirasak Wong-ekkabut, The molecular dynamics simulation of biomolecular system, Department of Genetics, Faculty of Science, Kasetsart University, Bangkok, Thailand, 28 March 2012

  4. Jirasak Wong-ekkabut, The molecular dynamics simulation of biomolecular system, Department of Physical Chemistry, Faculty of Science, Mahidol University, Bangkok, Thailand, 26 March 2012

  5. Jirasak Wong-ekkabut, Study and research experience in physics, Physics seminar course, Physics department, Faculty of Science, Mahidol University, Bangkok,Thailand, 12 June 2007

  6. S. Chadsuthi,W. Triampo, G. Doungchawee, J. Wong-ekkabut, D. Triampo, and I. M. Tang, Effect of TiO2 Nanoparticles on Pathogenic Spirochetes, Leptospira Interrogans, Siam Physics Congress, Nakorn Pathom, Thailand, 22-24 March, 2007

  7. S. Chadsuthi, W. Triampo, G. Doungchawee, and J. Wong-ekkabut, Antibacterial effects of TiO2 Nanoparticles Combine with UVA on Letospira Interrogans Serovar Canicola. 32nd Congress on Science and Technology of Thailand(STT.32) Venue: Queen Sirikit National Convention Center, Bangkok, Thailand, 10-12 October 2006

  8. H. Pitakjakpipop, W. Triampo, C. Kritanai, N. Nuttavut, J. Wong-ekkabut, I-Ming Tang, and G. Doungchawee, Estimation the number of Leptospires in liquid media by using turbidity via spectrophotometer, The Second National Conference on Optics and Applications (NCOA-2), Miracle Grand Convention Hotel, Bangkok, Thailand, 4 February 2005

  9. J. Wong-ekkabut, W. Triampo, I-Ming Tang, D. Triampo D. Baowan, and Y. Lenbury, Vacancy-Mediated Disordering Process in Binary Alloys at Finite Temperatures: Monte Carlo Simulations , RGJ-Ph.D. CongressVI, Jomtien Palm Beach Hotel and Resort, Pattaya ,Chonbury, Thailand, 28-30 April 2005

  10. Jirasak Wong-ekkabut, Wannapong Triampo, I-Ming Tang, Temperature dependent on the slope the disordering parameter of vacancy-mediated disordering processes in binary alloy systems at finite temperature : Monte Carlo simulations, 29th Congress on Science and Technology of Thailand, Golden Jubilee Convention Hall, Khon Kaen University, Khon Kaen, Thailand, 20-22 October 2003

  11. J. Wong-ekkabut, Modeling of Binary Alloy in Non-Equilibrium System , 4th Science Project Exhibition, Faculty of Science, Mahidol University, 13 March 2003

  12. J. Wong-ekkabut, W. Triampo and D. Triampo, Explicit calculations on small non-equilibrium driven lattice gas model, 28th Congress on Science and Technology of Thailand. Bangkok, Thailand, p 197, 24-26 October 2002

  13. J. Wong-ekkabut, W. Triampo and D. Arayasantiparb, The Non-equilibrium aspects of Metals: An exact Calculation on a small System, The Second Thailand Materials Science and Technology Conference: Materials Science and Technology for a Sustaninable Development of Thailand, 6-7 August 2002

  14. J. Wong-ekkabut, The Statistical Mechanics of Driven Diffusive Systems, 3rd Science Project Exhibition, Faculty of Science, Mahidol University, 14 March 2002


This page was last modified on 24/07/2010 by Jirasak Wong-ekkabut